GST Return Filing for E-commerce

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GST Return Filing for E-commerce Sellers

Running an online business comes with unique tax challenges. At Tax Pal Solutions, we provide tailored GST return filing services for e-commerce sellers, ensuring you stay compliant with government regulations, avoid penalties, and focus on growing your business.

Why Choose Tax Pal Solutions?

We simplify complex GST compliance by offering:

  • Accurate marketplace reconciliation
  • Timely GST return submissions
  • Expert handling of e-commerce transactions
  • Complete assistance with GSTR-1, GSTR-3B, and annual returns
  • Reliable compliance support to avoid penalties

Key GST Rules for E-commerce Sellers

Unlike traditional businesses, online sellers face mandatory registration and Tax Collected at Source (TCS) deductions by e-commerce operators.

Aspect Sellers of Goods Sellers of Services
Nature of Supply Physical/tangible goods Intangible offerings (e.g., consultancy, training)
GST Registration Threshold Rs. 40 lakhs (Rs. 20 lakhs for special states) Rs. 20 lakhs (Rs. 10 lakhs for special states)
TCS Deduction Applicable on platforms like Amazon, Flipkart Applicable on service marketplaces (e.g., UrbanClap)
Return Types GSTR-1, GSTR-3B, GSTR-9 (annual) GSTR-1, GSTR-3B, GSTR-9 (annual)
Inventory Management Mandatory Not required
Compliance Complexity Higher (due to TCS + stock records) Comparatively simpler

Main GST Returns for E-commerce

  1. GSTR-1 – Outward supplies (sales)

  • Monthly/quarterly return of sales invoices
  • Mandatory for B2B and high-value B2C transactions
  1. GSTR-3B – Summary return

  • Monthly/quarterly filing of sales, purchases, and tax payments
  • Used to claim Input Tax Credit (ITC)
  1. GSTR-9/9C – Annual return & reconciliation

  • Consolidates yearly filings
  • Mandatory above ₹2 crore (GSTR-9) and ₹5 crore (GSTR-9C) turnover

What Makes E-commerce GST Filing Different?

  • Mandatory GST Registration – Even if your turnover is below the threshold, you must register when selling via marketplaces.
  • TCS by Marketplaces – Operators deduct 1% TCS, which you can later claim.
  • No Composition Scheme – Most online sellers are excluded from this simplified option.

Common Penalties in E-commerce GST Filing

Default Penalty
Late filing with tax liability ₹50 per day (max ₹5,000 per return)
Late filing without tax liability ₹20 per day (max ₹5,000 per return)
Incorrect filing ₹10,000 or tax evaded (whichever is higher)
Wrong ITC claim 100% of wrongly claimed amount + 18% interest
Continuous non-filing Possible GST registration cancellation

Why Partner with Tax Pal Solutions?

  • 500+ compliance experts
  • 10,000+ trusted business reviews
  • 2,500+ monthly clients served across India
  • Dedicated team for e-commerce GST compliance